10 SMI-BLAST: a novel supervised search framework based on PSI-BLAST for protein remote homology detection. terms
doi:10.1093/bioinformatics/btaa772
Among those methods, ... is one of the most widely used and famous tools in this field.
phrase
Example: Among those methods, PSI-BLAST (Altschul, et al., 1997) is one of the most widely used and famous tools in this field.
ru: Среди этих методов ... один из наиболее широко используемых и известных инструментов в этой области.
benchmark
noun
a standard or point of reference against which things may be compared
Example: Benchmark dataset
ru: ориентир
enhance
verb
intensify, increase, or further improve the quality, value, or extent of
Example: JackHMMER (Johnson, et al., 2010) and HHblits (Remmert, et al., 2011) also use different iterative strategies to enhance the ability of
detecting remote homology protein.
ru: повышать
flowchart
noun
a graphical representation of a computer program in relation to its sequence of functions (as distinct from the data it processes)
Example: The flowchart of SMI-based framework is shown in Fig. 2. The flowchart contains four models.
ru: блок-схема
For evaluating the performance
phrase
Example: For evaluating the performance of SMI-BLAST, the Structural Classification of Proteins-extended (SCOPe2.06) dataset (Chandonia, et
al., 2018) is used, which is a golden benchmark for protein remote homology detection with less than 95% identity to each other.
ru: Для оценки производительности
How to measure ... is a challenging task.
phrase
Example: How to measure the similarity of remote homology protein sequence pairs is a challenging task.
ru: Как измерить ... - непростая задача.
In this study, we summarize
phrase
Example: In this study, we summarize three types of ISH errors of PSSM for protein remote homology detection.
ru: В этом исследовании мы резюмируем
iteration
noun
repetition of a mathematical or computational procedure applied to the result of a previous application, typically as a means of obtaining successively closer approximations to the solution of a problem
Example: It represents the protein sequence as the Position Specific Scoring Matrix (PSSM) in an iteration manner, leading to better performance than sequence alignment methods, such as BLAST (Altschul, et al., 1990) and FASTA (Pearson, 1990; Pearson and Lipman, 1988).
ru: повторение
remote
adjective
having very little connection with or relationship to
Example: In this study, we summarize three types of ISH errors of PSSM for protein remote homology detection.
ru: отдаленный
To evaluate the improvement of different methods
phrase
Example: To evaluate the improvement of different methods, the ranking quality and the ability of detecting remote homology sequences are measured.
